All agent output now goes to the store as nodes instead of
markdown/JSON files. Each node carries a Provenance enum identifying
which agent created it (AgentDigest, AgentConsolidate, AgentFactMine,
AgentKnowledgeObservation, etc — 14 variants total).
Store changes:
- upsert_provenance() method for agent-created nodes
- Provenance enum expanded from 5 to 14 variants
Agent changes:
- digest: writes to store nodes (daily-YYYY-MM-DD.md etc)
- consolidate: reports/actions/logs stored as _consolidation-* nodes
- knowledge: depth DB and agent output stored as _knowledge-* nodes
- enrich: experience-mine results go directly to store
- llm: --no-session-persistence prevents transcript accumulation
Deleted: 14 Python/shell scripts replaced by Rust implementations.
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