fix: run_one_agent uses memory tools as base, not filter

When def.tools was non-empty, it was filtering to ONLY those tools
instead of using memory tools as base + adding extras. This broke
digest agent (and any agent with explicit tools list) by removing
all 13 base memory tools.

Fixed to match the pattern in unconscious.rs:
- base = memory_tools()
- extras from journal_tools() if listed in def.tools

Co-Authored-By: Proof of Concept <poc@bcachefs.org>

src/agent/oneshot.rs

@@ -307,14 +307,21 @@ pub fn run_one_agent(
         defs::run_agent(store, &def, effective_count, &Default::default())?
     };
 
-    // Filter tools based on agent def, add filesystem output tool
-    let all_tools = super::tools::memory_and_journal_tools();
+    // Base memory tools + extras from agent def (matching unconscious.rs pattern)
+    let base_tools = super::tools::memory::memory_tools().to_vec();
+    let extra_tools = super::tools::memory::journal_tools().to_vec();
     let mut effective_tools: Vec<super::tools::Tool> = if def.tools.is_empty() {
-        all_tools.to_vec()
+        let mut all = base_tools;
+        all.extend(extra_tools);
+        all
     } else {
-        all_tools.into_iter()
-            .filter(|t| def.tools.iter().any(|w| w == &t.name))
-            .collect()
+        let mut tools = base_tools;
+        for name in &def.tools {
+            if let Some(t) = extra_tools.iter().find(|t| t.name == *name) {
+                tools.push(t.clone());
+            }
+        }
+        tools
     };
     effective_tools.push(super::tools::Tool {
         name: "output",

src/subconscious/agents/journal.agent

@@ -1,4 +1,4 @@
-{"agent":"journal","query":"","count":1,"tools":["journal_tail","journal_new","journal_update","memory_link_add","memory_search","memory_render","memory_used","memory_query"]}
+{"agent":"journal","query":"","count":1,"tools":["journal_tail","journal_new","journal_update"]}
 
 You are {assistant_name}'s episodic memory. Your job is to witness.
 

src/subconscious/agents/subconscious-journal.agent

@@ -1,4 +1,4 @@
-{"agent":"subconscious-journal","count":1,"tools":["journal_tail","journal_new","journal_update","memory_link_add","memory_search","memory_render","memory_used","memory_query"]}
+{"agent":"subconscious-journal","count":1,"tools":["journal_tail","journal_new","journal_update"]}
 
 You are {assistant_name}'s episodic memory. Your job is to witness.